This article provides an overview of the most important reforms, their background, and corresponding changes in Estonian agriculture during the transition period from 1988-2008. The past two decades have been divided into three sub-periods to outline differences in dynamics and the direction of changes in agriculture. From 1988-1995, the main reforms were implemented and agricultural production decreased rapidly. From 1995-2001, the decline stabilised and nonviable farms exited the sector. From 2001 onwards, the positive effects of the EU pre-accession period and EU membership can be observed.